View source for 21th Discussion-1 Nov 2018

Bioinfo-Core teleconference: Alex Peltzer demo on nexflow and nf-core. 

UPDATE: Slide deck [https://t.co/FecFUcOzDk can be found here] 

Link to video coming soon


After the positive feedback from the ISMB workshop, Alex Peltzer has agreed to run a demo for the bioinfo-core on nextflow and nf-core.  I plan to schedule this on November 1st, late afternoon in the GMT timezone.  Details on how this will occur are being finalised but I would invite everyone to submit any questions ahead of the demo so we can all get the most out of it.  

Please add your questions below:

* How to configure a pipeline for all users 
* How/where is  best to store pipelines and make accessible for users 
* How bad are the docker vulnerabilities 
* How to configure dockerised pipelines properly
* How to convert docker pipelines  to singularity (with and without AWS) 
* Easiest pipelines to create from scratch
* Resources per pipeline language?  Such as yaml files for each tool? 
* Running the pipeline manager: Once per user? How to enforce port usage? If once per server, how to only use individual users outputs?