Difference between revisions of "ERIS"

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*Bioinformatics, Harvard Medical School/Partners Healthcare Cencter for Gentics and Genomics  
 
*Bioinformatics, Harvard Medical School/Partners Healthcare Cencter for Gentics and Genomics  
  
'''Links:'''  
+
'''Links https://rc.partners.org:'''  
  
 
'''Group size:''' Diverse:
 
'''Group size:''' Diverse:
 
*3 bioinformatician developers
 
*3 bioinformatician developers
 
*3 Systems Engineers/administrators
 
*3 Systems Engineers/administrators
*1 Scientific & parallel computing Support Specialist/informatician
+
*4 Scientific, Data Analytics & parallel computing Engineers/Specialists/Scientists
 
*1 DBA/ DB developer
 
*1 DBA/ DB developer
 
*4 Site (MGH, BWH and McLean) senior support specialists
 
*4 Site (MGH, BWH and McLean) senior support specialists
Line 25: Line 25:
  
 
'''Environment:''' Diverse:
 
'''Environment:''' Diverse:
*Linux, Windows, HPC clusters (windows and Linux), Massive Storage, Internal Cloud, Oracle, Open DB's, Application support, web hosting
+
*Linux, HPC clusters (windows and Linux), Massive Storage, Internal Cloud, Oracle/Postgres/MySQL, Application support, web hosting
  
 
'''Tools:'''  
 
'''Tools:'''  
Sequencing, next-gen instruments, proteomics, protein folding, R, SAS, everything in public domain.
+
Sequencing, next-gen instruments, proteomics, image analysis, R, Jupyter, PythonSAS, everything in public domain.
  
'''Pertinent hardware info:''' Mainly HP, Sun, some dell, vanilla boxes, Cisco, IB
+
'''Pertinent hardware info:''' Mainly HP, some dell, vanilla boxes, Cisco, IB
  
 
Training:  
 
Training:  
  
 
Bioinformatics support model: Research-grade SLA's, support pipelines and tools as they can be applied to HPC environment (linux and windows clusters, Large shared-memory machines, web hosted pipelines, etc.
 
Bioinformatics support model: Research-grade SLA's, support pipelines and tools as they can be applied to HPC environment (linux and windows clusters, Large shared-memory machines, web hosted pipelines, etc.

Latest revision as of 16:46, 24 October 2017

Location: Boston and Cambridge MA, USA

Partners HealtCare Systems

  • Consisting of Massachusetts General Hospital
  • Brigham and Womens Hospital
  • Dana Farber Cancer Institute
  • Mclean Hospital
  • Spaulding Rehab Hospital
  • + 7 regional hospitals

Name/Title: Brent G. Richter, Director:

  • Enterprise Research Infrastructure & Systems (ERIS)
  • Massachusetts General Hospital & Brigham and Womens Hospital Site Research IT Services
  • Bioinformatics, Harvard Medical School/Partners Healthcare Cencter for Gentics and Genomics

Links https://rc.partners.org:

Group size: Diverse:

  • 3 bioinformatician developers
  • 3 Systems Engineers/administrators
  • 4 Scientific, Data Analytics & parallel computing Engineers/Specialists/Scientists
  • 1 DBA/ DB developer
  • 4 Site (MGH, BWH and McLean) senior support specialists
  • 8 Site Infrastructure Technicians

Environment: Diverse:

  • Linux, HPC clusters (windows and Linux), Massive Storage, Internal Cloud, Oracle/Postgres/MySQL, Application support, web hosting

Tools: Sequencing, next-gen instruments, proteomics, image analysis, R, Jupyter, PythonSAS, everything in public domain.

Pertinent hardware info: Mainly HP, some dell, vanilla boxes, Cisco, IB

Training:

Bioinformatics support model: Research-grade SLA's, support pipelines and tools as they can be applied to HPC environment (linux and windows clusters, Large shared-memory machines, web hosted pipelines, etc.