15th Discussion-24 Feb 2014 - Revision history

Hrh: /* Notes from the Call */

2014-02-25T09:26:54Z

Notes from the Call

Hrh: /* Notes from the Call */

2014-02-25T09:25:27Z

Notes from the Call

Hrh: /* Brief Description and Continuing Discussion: */

2014-02-25T09:24:39Z

Brief Description and Continuing Discussion:

Simon andrews at 16:53, 24 February 2014

2014-02-24T16:53:21Z

Simon andrews at 16:52, 24 February 2014

2014-02-24T16:52:32Z

Matthew Eldridge: /* Topic 2: Open Forum (Led by TBC) */

2014-02-24T12:43:05Z

Topic 2: Open Forum (Led by TBC)

Simon andrews at 14:10, 17 February 2014

2014-02-17T14:10:40Z

Simon andrews: Created page with "= Brief Description and Continuing Discussion: = == Topic 1: [TBC] == === Introduction and Preliminary Information === === Notes from the Call === == Topic 2: Open Forum ..."

2014-01-23T11:13:59Z

Created page with "= Brief Description and Continuing Discussion: = == Topic 1: [TBC] == === Introduction and Preliminary Information === === Notes from the Call === == Topic 2: Open Forum ..."

New page

= Brief Description and Continuing Discussion: =

== Topic 1: [TBC] ==

=== Introduction and Preliminary Information ===

=== Notes from the Call ===

== Topic 2: Open Forum (Led by TBC) ==

@@ Line 55: / Line 55: @@
 Lax - is going to recruit postdoc for
-FMI - in addition to galaxy also teach R courses doing 30-40 students.  Only 10% who pick it up - only good for those few students.
+Hans-Rudolf - in addition to galaxy also teach R courses doing 30-40 students.  Only 10% who pick it up - only good for those few students, but the effort is worth it.
 Simon - run courses but not for everyone - overlap between people who can’t run scripts themselves and people who

@@ Line 24: / Line 24: @@
 === Notes from the Call ===
-* Thomans Manke Freibur
+* Thomans Manke - Freiburg
 * Madeline Gogol
 * Elia Korpelainen Finland
@@ Line 102: / Line 102: @@
 Jim has said that if they provide training then they have to charge for effort after that.  People will not become perfect immediately.
 == Topic 2: Open Forum (Led by Hans-Rudof Hotz) ==

← Older revision		Revision as of 09:24, 25 February 2014
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	* Broadening our use of the wiki.		* Broadening our use of the wiki.
		+
		+
		+	=== Notes ===
		+
		+	Lax started the discussion with the question who got access to the Oxford Nanopore MinION program
		+
		+	a few people are involved or at least know someone who have been selected by Oxford Nanopore
		+
		+	there is a general worry about the error rate - will there be new aligner needed to deal with the errors?
		+
		+	will it replace PacBio?
		+
		+	general disappointment, that there is still no data available -> let' wait and see till the first participants from the 'MinION Access Programme' will show their data
		+
		+
		+	The discussion moved on to more general topics (from AGBT)
		+
		+	Oxford Nanopore is well ahead of other 'pore' sequencing systems
		+
		+	working with GRCh38 will require new alignment programs allowing for variations in the genome
		+
		+	GRCh38 has better centromeres
		+
		+	low usage of Ion Torrent system among the group
		+
		+	upgrade for HiSeq2500 should be available in fall
		+
		+
		+	At the end Jim's suggestion to broadening the use of the wiki was discussed
		+
		+	the pages should not duplicate other resources (eg for training material), but rather contain links to them
		+
		+	new feature will be possible in the future thanks to ISCB
		+
		+	it would be good to have test data available to share

@@ Line 24: / Line 24: @@
 === Notes from the Call ===
-Thomans Manke Freibur
+* Thomans Manke Freibur
-Madeline Gogol
+* Madeline Gogol
-Elia Korpelainen Finland
+* Elia Korpelainen Finland
-Hans-Rudolf Hotz - Basel
+* Hans-Rudolf Hotz - Basel
-George Bell Whitehead
+* George Bell Whitehead
-Alastair Kerr Edinburgh
+* Alastair Kerr Edinburgh
-Matt Eldridge - CRUK
+* Matt Eldridge - CRUK
-Charlie Whitacre MIT
+* Charlie Whitacre MIT
-Jim Cavalcoli - Michigan
+* Jim Cavalcoli - Michigan
-Hemant Kelkar - UNC
+* Hemant Kelkar - UNC
-Fredrick ?? Baltimore
+* Fredrick ?? Baltimore
-Fran Lewitter - Whitehead
+* Fran Lewitter - Whitehead

@@ Line 24: / Line 24: @@
 === Notes from the Call ===
-== Topic 2: Open Forum (Led by TBC) ==
+Thomans Manke Freibur
 We will again be holding an open forum to quickly cover any other topics which people would like to discuss.  We have had a few suggestions in advance which are listed below, but we can add more topics on the day.

@@ Line 28: / Line 28: @@
 We will again be holding an open forum to quickly cover any other topics which people would like to discuss.  We have had a few suggestions in advance which are listed below, but we can add more topics on the day.
-* How are people preparing for the new Human Genome Build 39?  Is anyone using it yet?
+* How are people preparing for the new Human Genome Build GRCh38?  Is anyone using it yet?
 * Nanopore sequencers - who is involved in the early access programme? What are you planning to do?

@@ Line 1: / Line 1: @@
 = Brief Description and Continuing Discussion: =
-== Topic 1: [TBC] ==
+== Topic 1: The Biologist is the Analyst ==
 === Introduction and Preliminary Information ===
 === Notes from the Call ===
 == Topic 2: Open Forum (Led by TBC) ==