19th Discussion-17 Oct 2017 - Revision history

Marcela: /* Attendees */

2017-10-18T06:01:10Z

Attendees

Mcm: /* Attendees */

2017-10-17T16:43:30Z

Attendees

Mcm: /* ISMB workshop recap */

2017-10-17T16:42:12Z

ISMB workshop recap

Mcm: /* Sabbaticals (brief discussion) */

2017-10-17T16:38:33Z

Sabbaticals (brief discussion)

Mcm: /* Deliverables and returning results to end users */

2017-10-17T16:38:21Z

Deliverables and returning results to end users

Mcm: /* ISMB workshop recap */

2017-10-17T16:38:04Z

ISMB workshop recap

Mcm: Agenda for next conf call

2017-08-23T15:40:43Z

Agenda for next conf call

New page

== ISMB workshop recap ==
Brief recap of the workshop in Prague by members who attended.

== Deliverables and returning results to end users ==
Best Practices: What does your core return?
* Shiny - are you using it, and how?
** tips / tricks
* knitr / Jupyter / other reporting
** How do you report results?
** What do users respond to best?
** Do you offer users any guidance or training prior to handing over the report?
** Do you have the notion of shared templates or is every report customized?

== Sabbaticals (brief discussion) ==
Would it be useful or interesting to take a short (or longer) sabbatical in a different bioinformatics core?
* Any experience with this?
* How would it be funded / what funding options exist?
* Any interest in further exploration of this idea?

@@ Line 16: / Line 16: @@
 * Charlie Whittaker
 * Neil Infante
 == ISMB workshop recap ==

@@ Line 3: / Line 3: @@
 Please feel free to add yourself if you were listening, we definitely missed some names...
-Alastair Kerr
+* Alastair Kerr
-Brent Richter
+* Brent Richter
-Hemant Kelkar
+* Hemant Kelkar
-Alberto Riva
+* Alberto Riva
-Madelaine Gogol
+* Madelaine Gogol
-Matt Eldridge
+* Matt Eldridge
-George Bell
+* George Bell
-Devon Ryan
+* Devon Ryan
-Scott
+* Scott
-Stuart Levine
+* Stuart Levine
-Thomas
+* Thomas
-Charlie Whittaker
+* Charlie Whittaker
-Neil Infante
+* Neil Infante
 == ISMB workshop recap ==

← Older revision		Revision as of 16:42, 17 October 2017
Line 1:		Line 1:
		+	== Attendees ==
		+
		+	Please feel free to add yourself if you were listening, we definitely missed some names...
		+
		+	Alastair Kerr
		+	Brent Richter
		+	Hemant Kelkar
		+	Alberto Riva
		+	Madelaine Gogol
		+	Matt Eldridge
		+	George Bell
		+	Devon Ryan
		+	Scott
		+	Stuart Levine
		+	Thomas
		+	Charlie Whittaker
		+	Neil Infante
		+
	== ISMB workshop recap ==		== ISMB workshop recap ==
	Brief recap of the workshop in Prague by members who attended.		Brief recap of the workshop in Prague by members who attended.

@@ Line 23: / Line 23: @@
 == Sabbaticals (brief discussion) ==
-Would it be useful or interesting to take a short (or longer) sabbatical in a different bioinformatics core?
-* Any experience with this?
+Sabbaticals were just touched on at the end. The problem raised is that many cores are stretched as is and may not be willing to give up anyone. We may revisit this topic next time.
-* How would it be funded / what funding options exist?
-* Any interest in further exploration of this idea?
+Anyone with suggestions for the next call, feel free to post to the mailing list.

@@ Line 19: / Line 19: @@
 == Deliverables and returning results to end users ==
-Best Practices: What does your core return?
-* Shiny - are you using it, and how?
+Alastair kicked off the discussion about deliverables. Sounds like many groups are increasingly using R notebooks, shiny apps, and interactive tools to return results. Rmarkdown is nice for training - press play on a code block. Shiny apps used include sort of substitutes for excel with linked tables and plots, documentation. Ways to tweak a figure to avoid the analyst making 400 versions of the same figure for publication. Matt's group had one that was a supplement to a pipeline with a few options to delve into a gene-centric view, for instance. Apps are very specific to a given data type. They have been asked to write portals to large data resources, but this could spiral out of control if it becomes a service. Not every core may have the resources for that.
 == Sabbaticals (brief discussion) ==