Bioinformatics and Scientific Computing Facility - Revision history

IanHenry at 08:39, 16 April 2015

2015-04-16T08:39:10Z

IanHenry at 08:37, 16 April 2015

2015-04-16T08:37:24Z

IanHenry at 08:35, 16 April 2015

2015-04-16T08:35:58Z

IanHenry at 08:35, 16 April 2015

2015-04-16T08:35:03Z

IanHenry at 08:34, 16 April 2015

2015-04-16T08:34:36Z

IanHenry: Created page with "'''Location''': Dresden, Germany '''Name/Title:''' MPI-CBG Scientific Computing Facility (Bioinformatics, Scientific Software Development, BioImage Informatics) '''Links:'''..."

2015-04-16T08:34:00Z

Created page with "'''Location''': Dresden, Germany '''Name/Title:''' MPI-CBG Scientific Computing Facility (Bioinformatics, Scientific Software Development, BioImage Informatics) '''Links:'''..."

New page

'''Location''': Dresden, Germany

'''Name/Title:''' MPI-CBG Scientific Computing Facility (Bioinformatics, Scientific Software Development, BioImage Informatics)

'''Links:'''
*[http://www.mpi-cbg.de/facilities/profiles/bioinformatics-and-scientific-computing.html| Core Facility Home Page]
*[http://people.mpi-cbg.de/henry| Facility Leader Home Page]

'''Group size:''' We are seven people (1x Facility Leader, 2x bioinformaticians, 2x software developers and 2x BioImage Informaticians)

'''Environment:''' Academic Research Environment

'''Pertinent hardware info:''' We have access to our own HPC resources in house:
'''''Cluster Overview'''''
No. of Physical nodes 44
CPU Intel Xeon E5-2640 @ 2.50 GHz
Memory Size 128GB
No. of Physical CPUs in a node 2
No. of Cores in a node 12 (2 x hexacores)
Total No. of Cores 480

'''Training:''' We are a member of the software carpentry project and offer training using this material. We also offer training in image analysis with Fiji/ImageJ and biological data analysis using R/Bioconductor

'''Bioinformatics support model:''' We are open to internal and external customers and recharge for our services

@@ Line 19: / Line 19: @@
 **No. of Cores in a node 	12 (2 x hexacores)
 **Total No. of Cores 	480
 '''Training:''' We are a member of the [http://software-carpentry.org/ software carpentry project] and offer training using this material.  We also offer training in image analysis with Fiji/ImageJ and biological data analysis using R/Bioconductor
 '''Bioinformatics support model:''' We are open to internal and external customers and recharge for our services

@@ Line 4: / Line 4: @@
 '''Links:'''
-*[http://www.mpi-cbg.de/facilities/profiles/bioinformatics-and-scientific-computing.html | Core Facility Home Page]
+*[http://www.mpi-cbg.de/facilities/profiles/bioinformatics-and-scientific-computing.html Core Facility Home Page]
-*[http://people.mpi-cbg.de/henry | Facility Leader Home Page]
+*[http://people.mpi-cbg.de/henry Facility Leader Home Page]
 '''Group size:''' We are seven people (1x Facility Leader, 2x bioinformaticians, 2x software developers and 2x BioImage Informaticians)
@@ Line 20: / Line 20: @@
 **Total No. of Cores 	480
-'''Training:''' We are a member of the software carpentry project and offer training using this material.  We also offer training in image analysis with Fiji/ImageJ and biological data analysis using R/Bioconductor
+'''Training:''' We are a member of the [http://software-carpentry.org/ software carpentry project] and offer training using this material.  We also offer training in image analysis with Fiji/ImageJ and biological data analysis using R/Bioconductor
 '''Bioinformatics support model:''' We are open to internal and external customers and recharge for our services

@@ Line 12: / Line 12: @@
 '''Pertinent hardware info:''' We have access to our own HPC resources in house:
-'''''Cluster Overview'''''
+*'''''Cluster Overview'''''
-*No. of Physical nodes 	44
+**No. of Physical nodes 	44
-*CPU 	Intel Xeon E5-2640 @ 2.50 GHz
+**CPU 	Intel Xeon E5-2640 @ 2.50 GHz
-*Memory Size 	128GB
+**Memory Size 	128GB
-*No. of Physical CPUs in a node 	2
+**No. of Physical CPUs in a node 	2
-*No. of Cores in a node 	12 (2 x hexacores)
+**No. of Cores in a node 	12 (2 x hexacores)
-*Total No. of Cores 	480
+**Total No. of Cores 	480
 '''Training:''' We are a member of the software carpentry project and offer training using this material.  We also offer training in image analysis with Fiji/ImageJ and biological data analysis using R/Bioconductor
 '''Bioinformatics support model:''' We are open to internal and external customers and recharge for our services