http://bioinfo-core.org/index.php?action=history&feed=atom&title=User%3APhil.ewels 2026-04-17T11:02:24Z Revision history for this page on the wiki MediaWiki 1.34.0 http://bioinfo-core.org/index.php?title=User:Phil.ewels&diff=10069&oldid=prev 2014-05-23T12:07:39Z

<p>Linked up and made it look nicer.</p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 12:07, 23 May 2014</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Postdoc bioinformatician working in the Genomics Applications Facility at SciLifeLab in Stockholm, Sweden. I previously worked as a bioinformatics postdoc with Wolf Reik and Simon Andrews at the Babraham Institute in Cambridge, UK. Before that I did my PhD at the bench, also at the Babraham Institute<del class="diffchange diffchange-inline">, </del>I&#039;m interested in epigenetics and new bioinformatics tools.  </div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>Postdoc bioinformatician working in the <ins class="diffchange diffchange-inline">[http://www.scilifelab.se/facilities/genomics-applications/ </ins>Genomics Applications Facility at SciLifeLab<ins class="diffchange diffchange-inline">] </ins>in Stockholm, Sweden. I previously worked as a bioinformatics postdoc with Wolf Reik and Simon Andrews at the <ins class="diffchange diffchange-inline">[http://www.bioinformatics.babraham.ac.uk/ </ins>Babraham Institute<ins class="diffchange diffchange-inline">] </ins>in Cambridge, UK. Before that I did my PhD at the bench, also at the <ins class="diffchange diffchange-inline">[http://www.babraham.ac.uk/ </ins>Babraham Institute<ins class="diffchange diffchange-inline">]. </ins>I&#039;m interested in epigenetics and new bioinformatics tools.  </div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>I&#039;ve written a handful of bioinformatics tools, <del class="diffchange diffchange-inline">such as</del>:</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>I&#039;ve written a handful of bioinformatics tools, <ins class="diffchange diffchange-inline">including</ins>:</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>niceLiftOver <del class="diffchange diffchange-inline">– a </del>simple tool to take a data input file and liftOver the genome co-ordinates in place, leaving all other data intact.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">;[https://github.com/ewels/niceLiftOver </ins>niceLiftOver<ins class="diffchange diffchange-inline">]</ins></div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">https</del>://<del class="diffchange diffchange-inline">github</del>.<del class="diffchange diffchange-inline">com</del>/<del class="diffchange diffchange-inline">ewels</del>/<del class="diffchange diffchange-inline">niceLiftOver</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">: A </ins>simple tool to take a data input file and liftOver the genome co-ordinates in place, leaving all other data intact.</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">;[http</ins>://<ins class="diffchange diffchange-inline">www.bioinformatics.babraham.ac</ins>.<ins class="diffchange diffchange-inline">uk/projects</ins>/<ins class="diffchange diffchange-inline">clusterflow</ins>/ Cluster Flow<ins class="diffchange diffchange-inline">]</ins></div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>Cluster Flow <del class="diffchange diffchange-inline">- a </del>package written to run bioinformatics processing pipelines in a cluster environment.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">: A </ins>package written to run bioinformatics processing pipelines in a cluster environment.</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>http://www.bioinformatics.babraham.ac.uk/projects/<del class="diffchange diffchange-inline">clusterflow</del>/</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">;[</ins>http://www.bioinformatics.babraham.ac.uk/projects/<ins class="diffchange diffchange-inline">labrador</ins>/ <ins class="diffchange diffchange-inline">Labrador]</ins></div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div> </div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">: A </ins>web based tool to manage projects and automate the processing of publicly available datasets.</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">Labrador - a </del>web based tool to manage projects and automate the processing of publicly available datasets.</div></td><td colspan="2"> </td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">http://www.bioinformatics.babraham.ac.uk/projects/labrador/</del></div></td><td colspan="2"> </td></tr> </table>

Phil.ewels http://bioinfo-core.org/index.php?title=User:Phil.ewels&diff=10067&oldid=prev 2014-05-23T11:54:22Z

<p>Creating user page for new user.</p> <p><b>New page</b></p><div>Postdoc bioinformatician working in the Genomics Applications Facility at SciLifeLab in Stockholm, Sweden. I previously worked as a bioinformatics postdoc with Wolf Reik and Simon Andrews at the Babraham Institute in Cambridge, UK. Before that I did my PhD at the bench, also at the Babraham Institute, I&#039;m interested in epigenetics and new bioinformatics tools. <br /> <br /> I&#039;ve written a handful of bioinformatics tools, such as:<br /> <br /> niceLiftOver – a simple tool to take a data input file and liftOver the genome co-ordinates in place, leaving all other data intact.<br /> https://github.com/ewels/niceLiftOver<br /> <br /> Cluster Flow - a package written to run bioinformatics processing pipelines in a cluster environment.<br /> http://www.bioinformatics.babraham.ac.uk/projects/clusterflow/<br /> <br /> Labrador - a web based tool to manage projects and automate the processing of publicly available datasets.<br /> http://www.bioinformatics.babraham.ac.uk/projects/labrador/</div>

Simon andrews