Difference between revisions of "Bioinformatics and Scientific Computing Facility"
From BioWiki
Jump to navigationJump to search| (3 intermediate revisions by the same user not shown) | |||
| Line 4: | Line 4: | ||
'''Links:''' | '''Links:''' | ||
| − | *[http://www.mpi-cbg.de/facilities/profiles/bioinformatics-and-scientific-computing.html | + | *[http://www.mpi-cbg.de/facilities/profiles/bioinformatics-and-scientific-computing.html Core Facility Home Page] |
| − | *[http://people.mpi-cbg.de/henry | + | *[http://people.mpi-cbg.de/henry Facility Leader Home Page] |
'''Group size:''' We are seven people (1x Facility Leader, 2x bioinformaticians, 2x software developers and 2x BioImage Informaticians) | '''Group size:''' We are seven people (1x Facility Leader, 2x bioinformaticians, 2x software developers and 2x BioImage Informaticians) | ||
| Line 12: | Line 12: | ||
'''Pertinent hardware info:''' We have access to our own HPC resources in house: | '''Pertinent hardware info:''' We have access to our own HPC resources in house: | ||
| − | '''''Cluster Overview''''' | + | *'''''Cluster Overview''''' |
| − | *No. of Physical nodes 44 | + | **No. of Physical nodes 44 |
| − | *CPU Intel Xeon E5-2640 @ 2.50 GHz | + | **CPU Intel Xeon E5-2640 @ 2.50 GHz |
| − | *Memory Size 128GB | + | **Memory Size 128GB |
| − | *No. of Physical CPUs in a node 2 | + | **No. of Physical CPUs in a node 2 |
| − | *No. of Cores in a node 12 (2 x hexacores) | + | **No. of Cores in a node 12 (2 x hexacores) |
| − | *Total No. of Cores 480 | + | **Total No. of Cores 480 |
| + | **4 GPU nodes equipped with NVidia M2090 Tesla GPU accelerator (Fermi architecture) | ||
| + | ** 200TB Lustre Filesystem | ||
| − | '''Training:''' We are a member of the software carpentry project and offer training using this material. We also offer training in image analysis with Fiji/ImageJ and biological data analysis using R/Bioconductor | + | '''Training:''' We are a member of the [http://software-carpentry.org/ software carpentry project] and offer training using this material. We also offer training in image analysis with Fiji/ImageJ and biological data analysis using R/Bioconductor |
'''Bioinformatics support model:''' We are open to internal and external customers and recharge for our services | '''Bioinformatics support model:''' We are open to internal and external customers and recharge for our services | ||
Latest revision as of 00:39, 16 April 2015
Location: Dresden, Germany
Name/Title: MPI-CBG Scientific Computing Facility (Bioinformatics, Scientific Software Development, BioImage Informatics)
Links:
Group size: We are seven people (1x Facility Leader, 2x bioinformaticians, 2x software developers and 2x BioImage Informaticians)
Environment: Academic Research Environment
Pertinent hardware info: We have access to our own HPC resources in house:
- Cluster Overview
- No. of Physical nodes 44
- CPU Intel Xeon E5-2640 @ 2.50 GHz
- Memory Size 128GB
- No. of Physical CPUs in a node 2
- No. of Cores in a node 12 (2 x hexacores)
- Total No. of Cores 480
- 4 GPU nodes equipped with NVidia M2090 Tesla GPU accelerator (Fermi architecture)
- 200TB Lustre Filesystem
Training: We are a member of the software carpentry project and offer training using this material. We also offer training in image analysis with Fiji/ImageJ and biological data analysis using R/Bioconductor
Bioinformatics support model: We are open to internal and external customers and recharge for our services
