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'''Welcome to the bioinfo-core's wiki!''' | '''Welcome to the bioinfo-core's wiki!''' | ||
| + | <br> | ||
| + | <br> | ||
| + | *'''[http://lists.open-bio.org/mailman/listinfo/bioinfo-core Sign up to the listserv and participate in the discussion!]''' | ||
| + | *'''[[BioWiki:Community_portal | Add your core to the wiki]]''' | ||
| + | *'''[https://join.slack.com/t/bioinfo-core/shared_invite/zt-1270uiv8w-iSMF5af8V89mpIoL19i60w Join our slack]''' | ||
| + | <br> | ||
| + | <br> | ||
| + | We thank [http://www.iscb.org ISCB] for hosting and maintaining this wiki. | ||
| + | <br> | ||
| + | <br> | ||
| + | ===Newest Content=== | ||
| + | * [[ISMB_2024:_BioinfoCoreWorkshop | ISMB 2024 Workshop]] | ||
| + | * [[ISMB_2023:_BioinfoCoreWorkshop | ISMB 2023 Workshop]] | ||
| + | * [[ISMB_2022:_BioinfoCoreWorkshop | ISMB 2022 Workshop]] | ||
| + | * [[22nd_Discussion-22_Nov_2019 | 22nd Discussion - Single-cell]] | ||
| + | * [[ISMB_2019:_BioinfoCoreWorkshop | ISMB 2019 Workshop]] | ||
| + | * [[21th_Discussion-6_Nov_2018 | 21th Discussion - Nextflow and nf-core demo]] | ||
| + | * [[ISMB_2018:_BioinfoCoreWorkshop | ISMB 2018 Workshop]] | ||
| + | * [[20th_Discussion-6_Feb_2018 | 20th Discussion - Training, Nanopore, and New Technology]] | ||
| + | * [[19th_Discussion-17_Oct_2017 | 19th Discussion - Workshop recap, Deliverables, & Sabbaticals]] | ||
| + | * [[ISMB_2017:_BioinfoCoreWorkshop | ISMB 2017 Workshop]] | ||
| + | * [[ISMB_2016:_BioinfoCoreWorkshop | ISMB 2016 Workshop]] | ||
| + | * [[18th_Discussion-16_Oct_2015 | 18th Discussion - ISMB2015 follow up]] | ||
| + | * [[Interesting NGS failures]] | ||
| + | * [[ISMB_2015:_BioinfoCoreWorkshop|ISMB 2015 Workshop - The evolving relationship between core facilities and researchers]] | ||
| + | * [[17th_Discussion-27_Feb_2015 | 17th Discussion - Best practices for bioinformatics training]] | ||
| + | * [[ISMB_2014:_InfrastructureForNewCores|16th Discussion - ISMB2014 follow up: Infrastructure for new Cores]] | ||
| + | * [[ISMB_2014:_BioinfoCoreWorkshopWriteUp|ISMB 2014 Workshop Write Up]] | ||
| + | * [[15th_Discussion-24_Feb_2014 | 15th Discussion - The biologist is the analyst]] | ||
| + | * [[ISCB_COSI_Proposal | Proposal to make bioinfo-core an ISCB community of special interest]] | ||
| + | * [[ISMB_2014:_BioinfoCoreWorkshop|ISMB 2014 Workshop Proposal]] | ||
| + | * [[14th_Discussion-7_November_2013| 14th Discussion - Evaluating software]] | ||
| + | * [[ISMB_2013:_BioinfoCoreWorkshop|ISMB 2013 Workshop]] | ||
| + | * [[13th_Discussion-5_November_2012| 13th Discussion - Embedded bioinformaticians and Integrative analysis]] | ||
| + | * [[ISMB_2012:_Workshop_Proposal|ISMB 2012 Workshop]] | ||
| + | * [[12th_Discussion-21_May_2012|12th Discussion - Managing Storage in a Core Facility]] | ||
| + | * [[11th_Discussion-7_November_2011|11th Discussion - Measuring the output of a Core and Tracking Software Versions]] | ||
| + | * ISMB 2012: Bioinfo Core Workshop - Long Beach CA - July 16, 2012 [http://www.iscb.org/ismb2012-program/ismb2012-workshops#w3|ISMB Workshop] | ||
| + | * [[ISMB 2011: Workshop on Analysis Pipelines for High Throughput Sequencing]] | ||
| + | * [[ISMB 2011: Workshop on Practical Aspects of Running a Core Facility]] | ||
| + | * [[ISMB 2011 Workshop Call]] | ||
| + | * ISMB 2010 Workshop [[Call Minutes]] page | ||
| + | * Include [http://twitter.com/#search?q=%23BioInfoCore #BioInfoCore] in your [http://twitter.com/ tweets] for the Core community. | ||
| + | * Numerous new additions to the community portal | ||
| − | + | *[[BioWiki:Community_portal | Community Portal]] | |
| − | We hold several events throughout the year including quarterly conference calls and a yearly set of informal presentations and dinners at the annual Intelligent Systems in Molecular Biology [http://www. | + | = Introduction = |
| + | Bioinfo-core is a worldwide body of people that manage or staff bioinformatics facilities within organizations of all types including academia, academic medical centers, medical schools, biotechs and pharmas. Through this wiki and our online [http://lists.open-bio.org/mailman/listinfo/bioinfo-core discussion lists] we discuss many topics that are challenging bioinformatics cores world wide: from IT, new instrumentation, staffing and training bioinformaticians, tools, software, to services for biologists and MD's. | ||
| + | <BR><BR> | ||
| + | We hold several events throughout the year including quarterly conference calls (with published [[Call Minutes]]) and a yearly set of informal presentations and dinners at the annual meeting, Intelligent Systems in Molecular Biology ([http://www.iscb.org/iscb-conferences ISMB]), the official conference of [http://www.iscb.org/ ISCB] | ||
| + | <br><br> | ||
| + | Please browse, add and participate in the wiki and the discussion lists. To edit the wiki, create a New Account and then edit the [[BioWiki:Community_portal | Community Portal]] to add a link for your core facility and its description. | ||
| − | + | = Wiki page links = | |
| − | + | *[[Call Minutes]]: Annual meetings at ISMB with presenations; Detailed minutes from quarterly conference calls on selected and pertinent topics. | |
| + | *[[BioWiki:Community_portal | Community Portal]]: list your organization! | ||
| + | *[[Ongoing Discussions]]: discussion forums including lists of software, tools, etc. | ||
| + | *[[Special:Categories]]: find pages using categories such as Tools, Presentations, NextGenSequencing, Meetings etc. | ||
| + | |||
| + | =Bioinfo-core Member Publications relevant to core facilities= | ||
| + | *[http://collections.plos.org/ploscompbiol/corefacilities.php PLoS Computational Biology Journal--CORE facilities: editorial and perspectives] | ||
| + | *[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000372 The Need for Centralization of Computational Biology Resources] Lewitter F, Rebhan M, Richter B, Sexton DP | ||
| + | *[http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1000369 Managing and Analyzing Next-Generation Sequence Data] Richter BG, Sexton DP | ||
| + | *[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000368 Establishing a Successful Bioinformatics Core Facility Team] Lewitter F, Rebhan M | ||
Latest revision as of 07:59, 13 November 2024
Welcome to the bioinfo-core's wiki!
We thank ISCB for hosting and maintaining this wiki.
Contents
Newest Content
- ISMB 2024 Workshop
- ISMB 2023 Workshop
- ISMB 2022 Workshop
- 22nd Discussion - Single-cell
- ISMB 2019 Workshop
- 21th Discussion - Nextflow and nf-core demo
- ISMB 2018 Workshop
- 20th Discussion - Training, Nanopore, and New Technology
- 19th Discussion - Workshop recap, Deliverables, & Sabbaticals
- ISMB 2017 Workshop
- ISMB 2016 Workshop
- 18th Discussion - ISMB2015 follow up
- Interesting NGS failures
- ISMB 2015 Workshop - The evolving relationship between core facilities and researchers
- 17th Discussion - Best practices for bioinformatics training
- 16th Discussion - ISMB2014 follow up: Infrastructure for new Cores
- ISMB 2014 Workshop Write Up
- 15th Discussion - The biologist is the analyst
- Proposal to make bioinfo-core an ISCB community of special interest
- ISMB 2014 Workshop Proposal
- 14th Discussion - Evaluating software
- ISMB 2013 Workshop
- 13th Discussion - Embedded bioinformaticians and Integrative analysis
- ISMB 2012 Workshop
- 12th Discussion - Managing Storage in a Core Facility
- 11th Discussion - Measuring the output of a Core and Tracking Software Versions
- ISMB 2012: Bioinfo Core Workshop - Long Beach CA - July 16, 2012 Workshop
- ISMB 2011: Workshop on Analysis Pipelines for High Throughput Sequencing
- ISMB 2011: Workshop on Practical Aspects of Running a Core Facility
- ISMB 2011 Workshop Call
- ISMB 2010 Workshop Call Minutes page
- Include #BioInfoCore in your tweets for the Core community.
- Numerous new additions to the community portal
Introduction
Bioinfo-core is a worldwide body of people that manage or staff bioinformatics facilities within organizations of all types including academia, academic medical centers, medical schools, biotechs and pharmas. Through this wiki and our online discussion lists we discuss many topics that are challenging bioinformatics cores world wide: from IT, new instrumentation, staffing and training bioinformaticians, tools, software, to services for biologists and MD's.
We hold several events throughout the year including quarterly conference calls (with published Call Minutes) and a yearly set of informal presentations and dinners at the annual meeting, Intelligent Systems in Molecular Biology (ISMB), the official conference of ISCB
Please browse, add and participate in the wiki and the discussion lists. To edit the wiki, create a New Account and then edit the Community Portal to add a link for your core facility and its description.
Wiki page links
- Call Minutes: Annual meetings at ISMB with presenations; Detailed minutes from quarterly conference calls on selected and pertinent topics.
- Community Portal: list your organization!
- Ongoing Discussions: discussion forums including lists of software, tools, etc.
- Special:Categories: find pages using categories such as Tools, Presentations, NextGenSequencing, Meetings etc.
Bioinfo-core Member Publications relevant to core facilities
- PLoS Computational Biology Journal--CORE facilities: editorial and perspectives
- The Need for Centralization of Computational Biology Resources Lewitter F, Rebhan M, Richter B, Sexton DP
- Managing and Analyzing Next-Generation Sequence Data Richter BG, Sexton DP
- Establishing a Successful Bioinformatics Core Facility Team Lewitter F, Rebhan M
